Publications

(2024). Earl Grey: a fully automated user-friendly transposable element annotation and analysis pipeline. Molecular Biology and Evolution.

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(2024). Calling structural variants with confidence from short-read data in wild bird populations. Genome Biology and Evolution.

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(2023). Transposon accumulation at xenobiotic gene family loci in aphids. Genome Research.

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(2023). The genome and sex-dependent responses to temperature in the common yellow butterfly, Eurema hecabe. BMC Biology.

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(2023). A New Chromosome-Assigned Mongolian Gerbil Genome Allows Characterization of Complete Centromeres and a Fully Heterochromatic Chromosome. Molecular Biology and Evolution.

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(2022). Genome-wide transcriptomic changes reveal the genetic pathways involved in insect migration. Molecular Ecology.

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(2022). The genome sequence of the scarce swallowtail, Iphiclides podalirius. G3.

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(2022). Chromosomal-level reference genome of the moth Heortia vitessoides (Lepidoptera: Crambidae), a major pest of agarwood-producing trees. Genomics.

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(2022). The genome sequence of the lesser marbled fritillary, Brenthis ino, and evidence for a segregating neo-Z chromosome. G3.

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(2022). Myriapod genomes reveal ancestral horizontal gene transfer and hormonal gene loss in millipedes. Nature Communications.

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(2022). Genome of the ramshorn snail Biomphalaria straminea—an obligate intermediate host of schistosomiasis. GigaScience.

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(2021). The genome sequence of the heath fritillary, Melitaea athalia (Rottemburg, 1775). Wellcome Open Research.

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(2021). Broadscale evolutionary analysis of eukaryotic DDE transposons. BioRxiv.

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(2021). Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Communications Biology.

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(2020). Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. BMC Genomics.

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(2020). Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). BMC Genomics.

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(2020). Millipede genomes reveal unique adaptations during myriapod evolution. PLoS Biology.

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(2020). Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements. Mobile DNA.

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(2020). Chromosomal-level reference genome of the incense tree Aquilaria sinensis. Molecular Ecology Resources.

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(2020). A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience.

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